Ghost Peaks In HPLC: What They Are And How To Remove?
Introduction and outcome: Ghost Peak In HPLC
The ghost peaks in HPLC are misleading for both qualitative and quantitative analysis because their source is unknown and they may overlap with the main peak or impurity peak. Their identification and removal is a difficult task for any chromatograph. That’s why I decided to share my skill-based knowledge on this topic. In this article, you will learn in detail about their identification and removal in HPLC along with frequently asked questions.
Ghost Peak In HPLC
A chromatographic peak that does not belong to the sample matrix or diluent and whose origin is unknown is called a ghost peak.

Source of Ghost peak
The following are the source of Ghost peak:
- HPLC Systemtem Contamination
- Column or Equipment Issues
- Matrix Effects or Interference
- HPLC Instrumental Problems
- Baseline Noise
- Sample Injection Problems
- Environmental Factors
- Improper Gradient Equilibration
- Dissolved gasses in the Mobile Phase
- Filter paper quality
- HPLC Vials Septa quality
HPLC Systemtem Contamination
- Contamination due to previous sample: If there are traces of previous samples left in the system (e.g., in chromatography columns or injection port or detector), they can produce ghost peaks.
- Sample preparation: Contamination may occur during sample preparation which leads to unwanted signals/Ghost peaks.
- Dirty Equipment: Poorly cleaned sample vials, or columns can lead to carryover or contamination that produces ghost peaks in subsequent analyses.
Column or Equipment Issues
- Column Overloading: Overloading a chromatography column can lead to ghost peaks
- Column Degradation: Damaged HPLC columns may produce ghost peaks or cause baseline noise.
- Leakage or Air in the System: Leaks in the sample line or air bubbles in the mobile phase can create ghost peaks in HPLC.
Matrix Effects or Interference
- Matrix Components: Some sample matrices, especially reaction mixture, contain compounds that can cause interfering signals, resulting in ghost peaks.
- Mobile Phase Contamination: If the mobile phase contains impurities or is not prepared and filtered correctly, this could lead to additional signals that are mistaken for ghost peaks.
HPLC Instrumental Problems
- Detector Noise or Drift: Sometimes the detector itself can create spurious signals or baseline shifts that lead to ghost peaks. This is particularly common if the detector is unstable or improperly calibrated.
- Detector Saturation: If the detector becomes saturated due to high sample concentrations or instrument settings, it can result in false peaks or strange signal responses.
- Inconsistent Flow or Pressure: Variations in flow rate, pressure, or temperature in chromatographic systems can cause irregular responses and ghost peaks.
Baseline Noise
- If the baseline is unstable or noisy, minor fluctuations in the signal may appear as ghost peaks when in fact they are just baseline variations.
Sample Injection Problems
- Injection System Malfunction: A malfunction in the sample injector (e.g., auto-sampler) can introduce unintended signals, either from residual solvents or contamination.
- Injection of Solvent or Reagent: Sometimes, if an injection contains an excess amount of solvent or reagent that wasn’t properly accounted for, it might create a signal resembling a ghost peak.
Environmental Factors
- Temperature Fluctuations: Temperature changes can affect the detector or the column, leading to changes in retention times or signal responses that could be interpreted as ghost peaks.
- Electromagnetic Interference (EMI): Equipment or power supplies that emit electromagnetic radiation could interfere with sensitive instrumentation, leading to artifact peaks.
How to Remove or Fix Ghost Peak
Ghost peak can be removed by the following ways:
- System Cleaning and Maintenance: Regular cleaning of the chromatographic system and columns helps to reduce contamination and carryover.
- Use Gradient Grade Reagents: Using purified solvents and reagents minimizes the risk of contamination.
- Optimize Instrument Settings: Ensure that detector settings (e.g., gain, response time) are properly calibrated to prevent false signals.
- Check for Leaks: Regularly inspect the system for leaks, especially in high-pressure systems.
- Proper Sample Handling: Avoid sample contamination by using clean equipment and proper storage conditions.
- Use of Ghost Traps/Columns
- Use of Column Guards
- Proper column Equilibration
- Proper Column washing (after analysis)/ Column Care
Disadvantages
- Unwanted peaks
- Create problem in analysis
- Variation in are in injection to injection
- Inconsistency in elution pattern ( may come in one injection and may not come in another injection.
Conclusion
Ghost peaks can cause significant problems in HPLC analysis, but with a systematic approach and attention, they can be identified and eliminated. I hope this article has helped you understand Ghost Peak In HPLC and its removal procedure. You may also want to check out other articles on my blog such as:
- What is the GC column bleeding (GC interview questions)?
- How to Clean and Regenerate the HPLC column?
FAQs
What is ghost column in HPLC?
A chromatographic peak that does not belong to the sample matrix or blank and whose origin is unknown is called a ghost peak.
What is ghost column in HPLC?
The guard column which is used to remove the ghost peak is called ghost column.
What causes a ghost peaks and what can I do to prevent this?
References
The ghost peaks in HPLC are misleading for both qualitative and quantitative analysis because their source is unknown and they may overlap with the main peak or impurity peak. Ghost peaks can be removed by proper HPLC column washing, using HPLC grade solvents and reagents and taking care during sample analysis.
Can ghost peak area vary from injection to injection?
Yes. Ghost peak area may vary from injection to injection.
Abbreviations
- HPLC: High pressure liquid chromatography
References
- Practical High-Performance Liquid Chromatography: VERONIKA R.MEYER
- ScienceDirect.com